You have nothing to worry about. I just got back last Monday and Sunday was the major strike day. There was no visible trouble and most of the problems have been outside of Cairo. I will be going again at the end of May and the end of June too. Please dont let this spoil your trip.
Things are not politically great at the moment in Egypt and the people are really suffering but Egypt needs every tourist and takes care of them as much as possible. You are safer there than in London.
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